Machine Learning for Evolutionary Genomics Data

9:45 - 10:00 (15min)

Introduction

10:00 - 11:00 (1h)

Keynote: Harnessing AI in phylogenomics

Tal Pupko

11:00 - 11:30 (30min)

Realistic data simulation

Franz Baumdicker

› Assessing usefulness of artificial genomes via local ancestry inference - Antoine Szatkownik, Laboratoire Interdisciplinaire des Sciences du Numérique 11:00-11:30 (30min)

11:30 - 12:00 (30min)

Coffee break

12:00 - 13:00 (1h)

Realistic data simulation

Franz Baumdicker

› Simulations of Sequence Evolution: How (Un)realistic They Are and Why - Johanna Trost, Université Claude Bernard Lyon 1 - Julia Haag, Heidelberg Institute for Theoretical Studies - Dimitri Höhler, Heidelberg Institute for Theoretical Studies - Laurent Jacob, Sorbonne Université 12:00-12:30 (30min)

› Fitting Indel Evolution Model Parameters to PFam Protein Alignments with a GPU-accelerated Framework - Annabel Large, Department of Bioengineering; University of California, Berkeley, Joint Bioengineering Graduate Group; University of California, Berkeley and University of California, San Francisco 12:30-13:00 (30min)

13:00 - 14:30 (1h30)

Lunch

14:30 - 15:30 (1h)

Keynote: Deep learning for the phylogenetic inference of species diversification

Hélène Morlon

15:30 - 16:30 (1h)

Phylogenetics

Alexandros Stamatakis

› Phyloformer: Towards fast and accurate phylogeny reconstruction with self-attention networks - Luca Nesterenko, Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 15:30-16:00 (30min)

› Learning from an Artificial Neural Network in Phylogenetics - Alina Leuchtenberger, Max Perutz Labs, Medical University of Vienna 16:00-16:30 (30min)

16:30 - 17:00 (30min)

Coffee break

17:00 - 18:00 (1h)

Phylogenetics

Alexandros Stamatakis

› Neural networks can predict ghost species diversity from gene transfers - Enzo Marsot, Max-Planck-Institut für Biochemie = Max Planck Institute of Biochemistry 17:00-17:30 (30min)

› Predicting Phylogenetic Bootstrap Values via Machine Learning - Julius Wiegert, Heidelberg Institute for Theoretical Studies 17:30-18:00 (30min)

18:00 - 19:00 (1h)

Poster session

Planning